Page 51 - 2017 Brochure
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B.S., Mathematics, National Taiwan University (1973)
• Ph.D., Operations Research, Cornell University (1980)
• Intelligent Chinese Input Software - Top Ten Most Distinguished Chinese Computer Products
in Taiwan (1993)
• Distinguished Research Awards from NSC (1991-1992, 1994-1995, 1996-1997)
• K.T. Lee Research Breakthrough Award , (1999)
• NSC Designated Research Fellow , (1999)
• NSC Appointed Outstanding Re-search Award , (2005)
• Academia Sinica Investigator Award , (2005)
• IEEE Fellow (2006)
• Teco Award , (2008)
• Pan Wen Yuan Distinguished Research Award , (2010)
• IICM Medal of Honor , (2012)
Publications 8. Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai*,
and Wen-Lian Hsu*, “Integration of Gene Normalization Stages
1. W. K. Shih and W. L. Hsu, “A new planarity test,” Theoretical and Co-reference Resolution Using a Markov-Logic Network,”
Computer Science 223, 179-191, (1999). Bioinformatics 27, 2586-2594, (2011).
2. K. P. Wu, H. N. Lin, J. M. Chang, T. Y. Sung, and W. L. Hsu, 9. Cheng-Wei Shih, Cheng-Wei Lee, Richard Tzong-Han Tsai,
“HYPROSP: A Hybrid Protein Secondary Structure Prediction Wen-Lian Hsu, “Validating Contradiction in Texts Using
Algorithm - a Knowledge-Based Approach,” Nucleic Acids Online Co-Mention Pattern Checking” ACM Transactions on
Research 32(17), 5059-5065, (2004). Asian Language Information Processing (TALIP), Volume 11
Issue 4, December 2012, pp. 17:1-12:21, (2012).
3. Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang,
Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung and Wen-Lian 10. Y ung-Chun Chang, Cen-Chieh Chen, Yu-Lun Hsieh, Chien
Hsu*, “RIBRA-an Error-Tolerant Algorithm for the NMR Chin Chen, Wen-Lian Hsu, “Linguistic Template Extraction
Backbone Assignment Problem,” Journal of Computational for Recognizing Reader-Emotion and Emotional Resonance
Biology 13, 229-244, (2006). Writing Assistance,” ACL-IJCNLP 2015, 775-780, (2015).
4. Hong-Jie Dai, Chi-Hsin Huang, Ryan T. K. Lin, Richard Tzong- 11. S hih-Hung Liu, Kuan-Yu Chen, Berlin Chen, Hsin-Min Wang,
Han Tsai, and Wen-Lian Hsu, “BIOSMILE web search: a web Hsu-Chun Yen, and Wen-Lian Hsu, “Combining Relevance
application for annotating biomedical entities and relations,” Language Modeling and Clarity Measure for Extractive Speech
Nucleic Acids Research 36, W390-W398, (2008). Summarization,” IEEE/ACM Transactions on Audio, Speech,
and Language Processing, Vol. 23, No. 6, (2015).
5. Cheng-Wei Lee, Min-Yuh Day, Cheng-Lung Sung, Yi-Hsun
Lee, Tian-Jian Jiang, Chia-Wei Wu, Cheng-Wei Shih, Yu-Ren 12. C hih-Hung Chou, Nai-Wen Chang, …, Wen-Lian Hsu,*
Chen, Wen-Lian Hsu*, “Boosting Chinese Question Answering and Hsien-Da Huang,* “miRTarBase 2016: updates to the
with Two Lightweight Methods: ABSPs and SCO-QAT,” ACM experimentally validated miRNA-target interactions database,”
Transaction on Asian Language Information Processing 7(4), Nucleic Acids Research, doi: 10.1093/nar/gkv1258, November
doi: 10.1145/1450295.1450297, (2008). 20, (2015).
6. Chih-Chiang Tsou, Yin-Hao Tsui, Yi-Hwa Yian, Yi-Ju 13. Y uxiang Jiang, Tal Ronnen Oron, …, Ching-Tai Chen, Wen-
Chen, Chuan-Yih Yu, Han-Yin Yang, Ke-Shiuan Lynn, Yu- Lian Hsu, et al., “An expanded evaluation of protein function
Ju Chen, Ting-Yi Sung*, and Wen-Lian Hsu*, “MaXIC-Q prediction methods shows an improvement in accuracy,”
Web: A Fully Automated Web Service Using Statistical and Genome Biology 17:184, doi: 10.1186/s13059-016-1037-6,
Computational Methods for Protein Quantitation Based on (2016).
Stable Isotope Labeling and LC-MS,” Nucleic Acids Research
37, W661-W669, (2009). 14. H sin-Nan Lin and Wen-Lian Hsu, “Kart: a divide-and-conquer
algorithm for NGS read alignment,” accepted by Bioinformatics.
7. Chih-Chiang Tsou, Chia-Feng Tasi, Ying-Hao Tsui, Putty-
Reddy Sudhir, Yi-Ting Wang, Yu-Ju Chen, Jeou-Yuan Chen,
Ting-Yi Sung, and Wen-Lian Hsu, “IDEAL-Q: An automated
tool for label-free quantitation analysis using an efficient peptide
alignment approach and spectral data validation,” Molecular &
Cellular Proteomics 9, 131-144, (2010).
49
• Ph.D., Operations Research, Cornell University (1980)
• Intelligent Chinese Input Software - Top Ten Most Distinguished Chinese Computer Products
in Taiwan (1993)
• Distinguished Research Awards from NSC (1991-1992, 1994-1995, 1996-1997)
• K.T. Lee Research Breakthrough Award , (1999)
• NSC Designated Research Fellow , (1999)
• NSC Appointed Outstanding Re-search Award , (2005)
• Academia Sinica Investigator Award , (2005)
• IEEE Fellow (2006)
• Teco Award , (2008)
• Pan Wen Yuan Distinguished Research Award , (2010)
• IICM Medal of Honor , (2012)
Publications 8. Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai*,
and Wen-Lian Hsu*, “Integration of Gene Normalization Stages
1. W. K. Shih and W. L. Hsu, “A new planarity test,” Theoretical and Co-reference Resolution Using a Markov-Logic Network,”
Computer Science 223, 179-191, (1999). Bioinformatics 27, 2586-2594, (2011).
2. K. P. Wu, H. N. Lin, J. M. Chang, T. Y. Sung, and W. L. Hsu, 9. Cheng-Wei Shih, Cheng-Wei Lee, Richard Tzong-Han Tsai,
“HYPROSP: A Hybrid Protein Secondary Structure Prediction Wen-Lian Hsu, “Validating Contradiction in Texts Using
Algorithm - a Knowledge-Based Approach,” Nucleic Acids Online Co-Mention Pattern Checking” ACM Transactions on
Research 32(17), 5059-5065, (2004). Asian Language Information Processing (TALIP), Volume 11
Issue 4, December 2012, pp. 17:1-12:21, (2012).
3. Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang,
Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung and Wen-Lian 10. Y ung-Chun Chang, Cen-Chieh Chen, Yu-Lun Hsieh, Chien
Hsu*, “RIBRA-an Error-Tolerant Algorithm for the NMR Chin Chen, Wen-Lian Hsu, “Linguistic Template Extraction
Backbone Assignment Problem,” Journal of Computational for Recognizing Reader-Emotion and Emotional Resonance
Biology 13, 229-244, (2006). Writing Assistance,” ACL-IJCNLP 2015, 775-780, (2015).
4. Hong-Jie Dai, Chi-Hsin Huang, Ryan T. K. Lin, Richard Tzong- 11. S hih-Hung Liu, Kuan-Yu Chen, Berlin Chen, Hsin-Min Wang,
Han Tsai, and Wen-Lian Hsu, “BIOSMILE web search: a web Hsu-Chun Yen, and Wen-Lian Hsu, “Combining Relevance
application for annotating biomedical entities and relations,” Language Modeling and Clarity Measure for Extractive Speech
Nucleic Acids Research 36, W390-W398, (2008). Summarization,” IEEE/ACM Transactions on Audio, Speech,
and Language Processing, Vol. 23, No. 6, (2015).
5. Cheng-Wei Lee, Min-Yuh Day, Cheng-Lung Sung, Yi-Hsun
Lee, Tian-Jian Jiang, Chia-Wei Wu, Cheng-Wei Shih, Yu-Ren 12. C hih-Hung Chou, Nai-Wen Chang, …, Wen-Lian Hsu,*
Chen, Wen-Lian Hsu*, “Boosting Chinese Question Answering and Hsien-Da Huang,* “miRTarBase 2016: updates to the
with Two Lightweight Methods: ABSPs and SCO-QAT,” ACM experimentally validated miRNA-target interactions database,”
Transaction on Asian Language Information Processing 7(4), Nucleic Acids Research, doi: 10.1093/nar/gkv1258, November
doi: 10.1145/1450295.1450297, (2008). 20, (2015).
6. Chih-Chiang Tsou, Yin-Hao Tsui, Yi-Hwa Yian, Yi-Ju 13. Y uxiang Jiang, Tal Ronnen Oron, …, Ching-Tai Chen, Wen-
Chen, Chuan-Yih Yu, Han-Yin Yang, Ke-Shiuan Lynn, Yu- Lian Hsu, et al., “An expanded evaluation of protein function
Ju Chen, Ting-Yi Sung*, and Wen-Lian Hsu*, “MaXIC-Q prediction methods shows an improvement in accuracy,”
Web: A Fully Automated Web Service Using Statistical and Genome Biology 17:184, doi: 10.1186/s13059-016-1037-6,
Computational Methods for Protein Quantitation Based on (2016).
Stable Isotope Labeling and LC-MS,” Nucleic Acids Research
37, W661-W669, (2009). 14. H sin-Nan Lin and Wen-Lian Hsu, “Kart: a divide-and-conquer
algorithm for NGS read alignment,” accepted by Bioinformatics.
7. Chih-Chiang Tsou, Chia-Feng Tasi, Ying-Hao Tsui, Putty-
Reddy Sudhir, Yi-Ting Wang, Yu-Ju Chen, Jeou-Yuan Chen,
Ting-Yi Sung, and Wen-Lian Hsu, “IDEAL-Q: An automated
tool for label-free quantitation analysis using an efficient peptide
alignment approach and spectral data validation,” Molecular &
Cellular Proteomics 9, 131-144, (2010).
49
