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研究人員｜ Research Faculty

● Computer Scientist, Information Science Institute, University of South- Guest Editor, ACM Transactions on Intelligent Systems and Technolo-
ern California, USA (2009-present) gies (2010).
許鈞南 Chun-Nan Hsu ● President, Taiwanese Association for Artificial Intelligence, Taiwan Led two teams to win 2 and 3 place in BioCreative II Challenge
rd
nd
(2009-present) Evaluation for Gene Mention Task, April 2007, National Center for
st
● Research Fellow, Institute of Information Science, Academia Sinica, Cancer Research, Madrid, Spain. The 1 place winner for an unbiased
Taiwan (2008-present) test corpus. (2007)
研究員 Research Fellow ● Adjunct Assistant Professor, the Department of Computer Science 資訊月電子化政府應用獎 (2003)
Ph.D., Computer Science, University of Southern California and Information Engineering, National Chiao-Tung University, Taiwan 經濟部中小企業創新研究獎 (2003)
(1999-2000) The First Linux Golden Penguin Award 第一屆LINUX黃金企鵝獎
Tel: +886-2-2788-3799 ext. 1801 ● Assistant Professor, the Department of Computer Science and Engi- (2003)
Fax: +886-2-2782-4814 neering, Arizona State University, AZ, USA (1996-1998) PhD thesis advisor award, Institute of Information and Computing
Email: chunnan@iis.sinica.edu.tw Machinery, Taiwan. 獲得中華民國資訊學會91年度博士論文指導教授
http://www.iis.sinica.edu.tw/pages/chunnan
佳作獎 (2002)

代表著作 Publications
研究簡介 Research Description

許鈞南博士的研究專長為機器學習、Data Mining、資料 Dr. Chun-Nan Hsu is currently Associate Research Fellow and Leader of the Adap- 1. Yu-Shi Lin, Chung-Chih Lin, Yuh-Show Tsai, Tien-Chuan Ku, Yi-Hung 12. Hsiang-Yu Yuan, Jen-Jie Chiou, Wen-Hsien Tseng, Chia-Hung Liu,
庫系統與生物資訊。許博士1988年由新竹交通大學計算 tive Internet Intelligent Agents (AIIA) Lab at the Institute of Information Science, Huang and Chun-Nan Hsu. A Spectral Graph Theoretic Approach to Chuan-Kun Liu,Yi-Jung Lin, Hui-Hung Wang, Adam Yao, Yuan-Tsong
機工程系畢業、1992、1996在美國南加州大學獲得電腦 Academia Sinica, Taipei, Taiwan. His research interests include machine learning, Quantification and Calibration of Collective Morphological Differences Chen and Chun-Nan Hsu. FASTSNP: an always up-to-date and extend-
in Cell Images. To appear in Bioinformatics ISMB 2010 Proceedings.
able service for SNP function analysis and prioritization. Nucleic Acids
科學碩士與博士學位。1996年博士尚未完成口試，即獲 data mining, databases and bioinformatics. He earned his M.S. and Ph.D. degree in 2. Wen-Ching Chan, Po-Huang Liang, Yan-Ping Shih, Ueng-Cheng Yang, Research 34 (Web Server issue): W635-¬ W641, 2006.
聘為美國亞歷桑納州立大學助理教授。1998年返台於中 Computer Science from the University of Southern California, Los Angeles, CA, in Wen-Chang Lin, and Chun-Nan Hsu. Learning to predict expression ef- 13. Chun-Nan Hsu, Chia-Hui Chang, Hung-Hsuan Huang, Chien-Chi
央研究院任職至今。1995年唯一以研究生身份在全球第 1992 and 1996, respectively, and his B.S. degree in Computer Engineering from the ficacy of vectors in recombinant protein production. BMC Bioinformat- Chang. Re-configurable web wrapper agents for bioinformatics data
一屆 Knowledge Discovery and Data Mining (KDD) 研討會 National Chiao-Tung University, Hsinchu, Taiwan, in 1988. In 1996, before he passed ics 11(Suppl 1):S21, January 2010. integration. Journal of American Society of Information Science and
Technology, 56(5):505-517, Special Issue on Bioinformatics, 2005.
以口頭報告方式向全體與會者(Plenary)發表論文。1997 his doctoral oral exam, he had been offered a position as Assistant Professor at the 3. Chun-Nan Hsu, Yu-Ming Chang, Han-Shen Huang and Yuh-Jye Lee. 14. Chun-Nan Hsu, Hao-Hsiang Chung and Han-Shen Huang. Mining
年受邀為全球第一本 Data Mining 的專書 “Advances in Department of Computer Science and Engineering, Arizona State University, Tempe, Periodic Step-Size Adaptation for Single Pass On-line Learning. In Y. sparse and skewed transaction data for personalized shopping recom-
Bengio, D. Schuurmans, J. Lafferty, C. K. I. Williams and A. Culot-
knowledge discovery and data mining” 撰寫論文，1998 AZ. He taught there for two years before he returned to Taiwan in 1998. He gave a ta, editors, Advances in Neural Information Processing Systems 22 mendation. Machine Learning, 57(1):35-59, Special Issue on Data Min-
年受邀在全球第一本以 Data Mining 為主題的期刊 “Data plenary presentation in the first International Conference on Knowledge Discovery (NIPS*2009), pp.763—771, Vancouver, Canada, December 7-10, 2009. ing Lessons Learned, October, 2004.
mining and knowledge discovery” 發表論文。所發明的技 and Data Mining (KDD) in 1995, the only graduate student among ten other senior 4. Chun-Nan Hsu, Han-Shen Huang, Yu-Ming Chang and Yuh-Jye Lee. 15. Chun-Nan Hsu, Hung-Ju Huang and Tzu-Tsung Wong. Implications of
術在2003年獲得三項資訊產品創新研發獎。2005年開始 scientists as plenary presenters in the conference. In 1997, he was invited to contrib- Periodic step-size adaptation in second-order gradient descent for sin- the Dirichlet assumption for discretization of continuous variables in
gle-pass on-line structured learning. Machine Learning 77(2-3):195—
naive Bayesian classifiers. Machine Learning, 53(3):235-263, Decem-
擔任基因體醫學國家型計畫的生物資訊核心設施計畫IT ute a chapter in the book “Advances in Knowledge Discovery and Data Mining,” once 224, December 2009. ber, 2003.
組主持人。2007年率領研究團隊獲得全球生醫論文文獻 considered the bible of data mining. In 1998, he was invited to contribute a research 5. Han-Shen Huang, Bo-Hou Yang, Yu-Ming Chang, and Chun-Nan Hsu. 16. Chia-Hui Chang, Harianto Siek, Jiann-Jyh Lu, Jen-Jie Chiou and Chun-
探勘競賽 BioCreative 2 最佳成績。2008年完成第一篇完 article to “Data Mining and Knowledge Discovery,” the first scientific journal special- Global and componentwise extrapolations for accelerating training of Nan Hsu. Reconfigurable Web wrapper agents. IEEE Intelligent Sys-
全在台灣完成，並且被接受以口頭報告方式在 ISMB 研 ized in the subject. He co-founded DeepSpot Intelligent Systems Inc. in Taiwan in Bayesian networks and conditional random fields. Data Mining and tems, 18(5):34-40, special Issue on Web Information Integration, Sep-
Knowledge Discovery 19(1):58—94 , August 2009.
tember 2003.
討會發表的論文。ISMB 是全球最重要的生物資訊研討 2001 and won three major government sponsored industrial awards in 2003. Since
會，有許多口頭報告的演講者屬諾貝爾獎等級的人士。 2005, he has been the principal investigator of the IT component of the Advanced 6. Cheng-Ju Kuo, Maurice HT Ling, Kuan-Ting Lin and Chun-Nan Hsu. 17. Chia-Hui Chang, Chun-Nan Hsu and Shao-Cheng Lui. Automatic In-
formation Extraction from Semi-Structured Web Pages by Pattern Dis-
BIOADI: a machine learning approach to identifying abbreviations
許博士已經發表近90篇論文，其中的重要著作已經被引 Bioinformatics Core, National Research Program in Genomic Medicine, Taiwan, and and definitions in biological literature. BMC Bioinformatics 10(Suppl covery Decision Support Systems, 35(1):129-147, Special Issue on Web
用400次之多。目前許博士專注於利用人工智慧開發新 leading one of the largest research efforts in computerized drug design and discov- 15):S7, December 2009. Retrieval and Mining, January, 2003.
藥，以及能由無限多的訓練樣本持續訓練的機器學習演 ery in Taiwan. In 2006, the first drug candidate due to the use of the software his 7. Chun-Nan Hsu, Yu-Ming Chang, Cheng-Ju Kuo, Yu-Shi Lin, Han-Shen 18. Euna Jeong and Chun-Nan Hsu. View inference for heterogeneous
算法。 team developed was commercialized. In 2007, his teams achieved the best scores in Huang and I-Fang Chuang. Integrating High Dimensional Bi-direction- XML information integration. Journal of Intelligent Information Sys-
the BioCreative 2 text mining challenge, an international contest sponsored by CNIO al Parsing Models for Gene Mention Tagging. In the 16th International tems, 20(1):81-99, Special Issue on Web Intelligence, January, 2003.
(Spanish Center of Cancer Research), MITRE Co., and NCBI (National Center for Bio- Conference on Intelligent Systems for Molecular Biology (ISMB 2008) 19. Hung-Ju Huang and Chun-Nan Hsu. Bayesian Classification for Data
and Bioinformatics, 2008.
technology Information, National Institutes of Health, USA). The purpose of the con- from the Same Unknown Class IEEE Transactions on Systems, Man,
test was to evaluate whether software systems can extract knowledge from a large 8. Chung-Chih Lin, Yuh-Show Tsai, Yu-Shi Lin, Tai-Yu Chiu, Chia-Cheng and Cybernetics Part B VOL.32, NO.2, APRIL 2002.
Hsiung, May-I Lee, Jeremy C. Simpson and Chun-Nan Hsu. Boosting
collection of bio-medical research text automatically. In 2008, Dr. Hsu’s paper was ac- multiclass learning with repeating codes and weak detectors for protein 20. Chun-Nan Hsu, Hung-Ju Huang and Dietrich Schuschel. The ANNIG-
cepted for oral presentation in ISMB 2008, one of the most prestigious conferences subcellular localization. Bioinformatics 23(24):3374-3381, 2007. MA-wrapper approach to Fast Feature Selection for Neural Nets IEEE
Transactions on Systems, Man, and Cybernetics Part B VOL.32, NO.2,
in the field of bioinformatics and computational biology. Dr. Hsu has published 78 9. Larry Smith, Lorraine K Tanabe, Rie Johnson nee Ando, Cheng-Ju Kuo, APRIL 2002.
scientific articles since 1993. Some of the articles have been cited more than 200 I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, and 27 other co-authors. 21. Chun-Nan Hsu and Craig A. Knoblock. Semantic query optimization
Overview of BioCreative II gene mention recognition. Genome Biol-
times. Currently, Dr. Hsu has been working on applying artificial intelligence to dis- ogy, 9(Suppl 2):S2, September 1, 2008 (Proceedings of the BioCreative for query plans of heterogeneous multi-database systems. IEEE Trans-
cover innovative disease treatments and working on a new machine learning algo- II - Critical Assessment for Information Extraction in Biology Chal- actions on Knowledge and Data Engineering, 12(6) November/Decem-
ber, 2000, page 959-978.
rithm that can learn from infinite many training examples. lenge).
22. Chun-Nan Hsu and Craig A. Knoblock. Discovering robust knowledge
10. Dau-Cheng Lyu, Ren-Yuan Lyu, Yuang-chin Chiang and Chun-Nan from databases that change. Data Mining and Knowledge Discovery,
Hsu. Cross-lingual audio-to-text alignment for multimedia content 2(1):69-95, 1998.
management. Decision Support Systems, 45(3):554—566, Special Issue
on Multilingual Knowledge Management, 2008. 23. Chun-Nan Hsu and Ming-Tzung Dung. Generating finite-state trans-
ducers for semistructured data extraction from the web. Information
11. Chun-Nan Hsu, Jin-Mei Lai, Chia-Hung Liu,Huei-Hun Tseng, Chih- Systems, 23(8):521-538, 1998. Special Issue on Semistructured Data.
Yun Lin, Kuan-Ting Lin, Hsu-Hua Yeh, Ting-Yi Sung, Wen-Lian Hsu,
Li-Jen Su, Sheng-An Lee, Chan-Han Chen, Gen-Cher Lee, D.T. Lee, 24. Yigal Arens, Chin Y. Chee, Chun-Nan Hsu, and Craig A. Knoblock. Re-
Yow-Ling Shiue, Chang-Wei Yeh, Chao-Hui Chang, Cheng-Yan Kao, trieving and integrating data from multiple information sources. Inter-
Chi-Ying F. Huang. Detection of the inferred interaction network in national Journal of Intelligent and Cooperative Information Systems,
hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellu- 2(2):127-158, June 1993.
lar Carcinoma genes Online). BMC Bioinformatics 8(66):1471-2105,
2007.
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